Basic Information
Locus ID:
evm.TU.LG05.1616
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 37506481 | 37509921 | - | evm.TU.LG05.1616 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 30,475.37 Da | 47.23 | 70.37 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 58 | 111 | 1.40281E-25 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 58 | 114 | 2.9E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 55 | 122 | 4.24E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 122 | 4.3E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 60 | 109 | 7.5E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 60 | 110 | 12.710573 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 75 | 84 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 161 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_006451894.1 | E3 ubiquitin-protein ligase RMA3 [Citrus clementina] | 0 |
| Q8GUK7 | E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7IDP6 | RING-type E3 ubiquitin transferase OS=Acer yangbiense OX=1000413 GN=EZV62_008277 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology