Basic Information
Locus ID:
evm.TU.LG05.1581
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 34697713 | 34769209 | + | evm.TU.LG05.1581 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 451,945.66 Da | 44.16 | 88.27 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2562 | 2646 | 2.61376E-5 | - |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3197 | 3350 | 1.6E-9 | IPR009543 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 139 | 383 | 6.2E-65 | IPR031646 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1913 | 2082 | 9.0E-14 | IPR009291 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 579 | 803 | 5.9E-33 | IPR031642 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 2.2E-31 | IPR026854 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2164 | 2307 | 1.4E-9 | IPR009291 |
| Pfam | PF16909 | Vacuolar-sorting-associated 13 protein C-terminal | 3602 | 3746 | 3.6E-9 | IPR031645 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2543 | 2664 | 4.09E-6 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2544 | 2694 | 3.6E-6 | IPR035892 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 2537 | 2686 | 9.193098 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3423 | 3447 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_010679514.1 | uncharacterized protein LOC104894866 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q54LB8 | Intermembrane lipid transfer protein vps13A OS=Dictyostelium discoideum OX=44689 GN=vps13A PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KY05 | C2 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology