Basic Information
Locus ID:
evm.TU.LG05.1368
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 33511327 | 33511785 | - | evm.TU.LG05.1368 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 17,059.06 Da | 54.59 | 67.30 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 35 | 88 | 1.70049E-24 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 37 | 86 | 6.4E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 32 | 99 | 4.32E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 14 | 113 | 8.0E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 37 | 86 | 4.8E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 37 | 87 | 12.858103 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 52 | 61 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 138 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_006451894.1 | E3 ubiquitin-protein ligase RMA3 [Citrus clementina] | 0 |
| Q8GUK7 | E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1 | 0 | |
| TrEMBL | V4WEZ9 | RING-type E3 ubiquitin transferase OS=Citrus clementina OX=85681 GN=CICLE_v10009229mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology