Basic Information
Locus ID:
evm.TU.LG05.1266
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 20190666 | 20193422 | - | evm.TU.LG05.1266 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.29 | 14,886.19 Da | 25.67 | 67.18 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 8 | 38 | 5.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 51 | 82 | 0.051 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 8 | 107 | 3.66E-19 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 138 | 2.6E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 2 | 38 | 0.012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 44 | 83 | 0.0031 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 6 | 40 | 13.415834 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 51 | 84 | 9.230148 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 6 | 40 | 11.128319 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 51 | 92 | 11.711506 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 25 | 39 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 142 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18080.1 | Transducin/WD40 repeat-like superfamily protein. Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene. | 0 |
| RefSeq | XP_042060923.1 | guanine nucleotide-binding protein subunit beta-like protein [Salvia splendens] | 0 |
| P93340 | Small ribosomal subunit protein RACK1 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A4LW64 | Guanine nucleotide-binding protein subunit beta-like protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_08472 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0061s00007.v1.0 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG05.1266, evm.TU.LG12.496, evm.TU.LG19.367 |