Basic Information
Locus ID:
evm.TU.LG05.1217
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Secretory pathway protein Sec39
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 30258126 | 30273257 | + | evm.TU.LG05.1217 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 272,146.06 Da | 45.10 | 95.28 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08314 | Secretory pathway protein Sec39 | 591 | 896 | 3.0E-16 | IPR013244 |
| Pfam | PF08314 | Secretory pathway protein Sec39 | 944 | 1129 | 4.8E-14 | IPR013244 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 70 | 371 | 2.11E-10 | IPR036322 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24350.1 | 0 | |
| RefSeq | XP_031271389.1 | MAG2-interacting protein 2 [Pistacia vera] | 0 |
| Q9FIN7 | MAG2-interacting protein 2 OS=Arabidopsis thaliana OX=3702 GN=MIP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7GVN7 | Sec39 domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_024440 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2157 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16250 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010151 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g216590 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12361, Sbi_jg45978 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20310 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005625 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl19170, Sgl56202, Sgl61697, Sgl64814, Sgl69274 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019553, gene:ENSEOMG00000039126 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9AG0017750 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30169110 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G005210 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719812 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1014.V1.1, AsparagusV1_03.1015.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G13635 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G24350.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003502m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g22970.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g077250.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1652 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1787 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g08820 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0074s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g10930 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11662, nbisL1-mrna-11663 |
| Nitrariaceae | Nitraria sibirica | 4 | evm.TU.LG01.2484, evm.TU.LG01.2485, evm.TU.LG01.2486 ... |
| Plantaginaceae | Plantago ovata | 2 | Pov_00010989, Pov_00041764 |
| Plumbaginaceae | Limonium bicolor | 7 | Lb1G05406, Lb1G05407, Lb1G05439, Lb1G05440, Lb1G05441 ... |
| Poaceae | Echinochloa crus-galli | 5 | AH05.1, AH05.501, BH05.549, CH05.630, CH05.888 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0619580.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_025647 |
| Poaceae | Oryza coarctata | 2 | Oco23G004040, Oco24G003580 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g13150.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G087500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0203066 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr04G024150, Chr06G026530, Chr06G026540, Chr06G026550 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G587600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG049760, gene_TRIDC6BG058220 |
| Poaceae | Triticum aestivum | 4 | TraesCS5B02G507000.1, TraesCS6A02G333100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb359130_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52016 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24912 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1580, evm.TU.LG14.834 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g12590 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.672 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24832 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18527 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19077 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.170 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016121 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-178 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10432 |
| Salicaceae | Populus euphratica | 6 | populus_peu27981, populus_peu27982, populus_peu27983 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632126 |
| Solanaceae | Solanum chilense | 1 | SOLCI006441900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014591 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3988 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2668 |
| Zosteraceae | Zostera marina | 1 | Zosma04g06270.v3.1 |