Basic Information
Locus ID:
evm.TU.LG05.1213
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 30134785 | 30145616 | + | evm.TU.LG05.1213 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 36,985.87 Da | 57.84 | 71.50 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 138 | 205 | 1.10957E-33 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 140 | 204 | 3.9E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 50 | 203 | 9.67E-15 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 134 | 217 | 5.7E-20 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 139 | 210 | 6.9E-6 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 138 | 216 | 10.445465 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.2 | nucleotide binding;nucleic acid binding. | 0 |
| RefSeq | XP_024029775.1 | RNA-binding protein 1 [Morus notabilis] | 0 |
| G7ID19 | RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J1AA63 | RNA-binding protein 2-like OS=Herrania umbratica OX=108875 GN=LOC110416131 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology