Basic Information
Locus ID:
evm.TU.LG05.1177
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 29236267 | 29238099 | - | evm.TU.LG05.1177 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.18 | 39,877.59 Da | 44.40 | 78.87 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 23 | 59 | 1.9E-7 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 59 | 275 | 6.75E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 21 | 98 | 1.83E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 8 | 90 | 7.8E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 121 | 297 | 6.5E-7 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 21 | 73 | 10.000863 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56400.1 | FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein. | 0 |
| RefSeq | XP_031259014.1 | F-box/FBD/LRR-repeat protein At3g26920-like [Pistacia vera] | 0 |
| Q9FM91 | Putative FBD-associated F-box protein At5g56400 OS=Arabidopsis thaliana OX=3702 GN=At5g56400 PE=4 SV=2 | 0 | |
| TrEMBL | A0A5C7IKX4 | F-box domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_004982 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30025950 |
| Nitrariaceae | Nitraria sibirica | 10 | evm.TU.LG01.220, evm.TU.LG01.266, evm.TU.LG03.1934 ... |