Basic Information
Locus ID:
evm.TU.LG05.1126
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
lysine-specific demethylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 27913896 | 27924184 | - | evm.TU.LG05.1126 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 184,958.89 Da | 54.11 | 67.27 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02373 | JmjC domain, hydroxylase | 1476 | 1573 | 2.6E-13 | IPR003347 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 1473 | 1615 | 4.39E-22 | - |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 872 | 1047 | 6.04E-8 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 856 | 1148 | 1.3E-87 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 1426 | 1599 | 1.4E-63 | - |
| SMART | SM00384 | AT_hook_2 | 584 | 596 | 4.1 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 331 | 343 | 3.6 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 529 | 541 | 400.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 374 | 386 | 17.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 442 | 454 | 10.0 | IPR017956 |
| SMART | SM00558 | cupin_9 | 973 | 1590 | 5.9E-74 | IPR003347 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 608 | 654 | 9.405901 | IPR001841 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 992 | 1590 | 20.431652 | IPR003347 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 15 | 60 | 14.460512 | IPR014977 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1088 | 1103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1088 | 1152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 509 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 509 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1623 | 1642 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1119 | 1149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1104 | 1118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 400 | - | - |
| Coils | Coil | Coil | 1121 | 1147 | - | - |
| Coils | Coil | Coil | 1641 | 1642 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00990.1 | Transcription factor jumonji (jmjC) domain-containing protein. | 0 |
| RefSeq | XP_031269233.1 | uncharacterized protein LOC116127730 isoform X1 [Pistacia vera] | 0 |
| Q8VYB9 | Lysine-specific demethylase JMJ27 OS=Arabidopsis thaliana OX=3702 GN=JMJ27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J4QK03 | WRC domain-containing protein OS=Castanea mollissima OX=60419 GN=CMV_019314 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology