Basic Information
Locus ID:
evm.TU.LG05.1046
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 25446628 | 25454846 | - | evm.TU.LG05.1046 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 51,732.85 Da | 42.94 | 88.95 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 126 | 446 | 0.0 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 129 | 391 | 1.3E-117 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 127 | 390 | 1.8E-55 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 391 | 448 | 3.53E-18 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 156 | 459 | 1.5E-103 | IPR027417 |
| SMART | SM00382 | AAA_5 | 178 | 349 | 4.6E-9 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 126 | 446 | 8.2E-144 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 157 | 315 | 29.155781 | IPR020588 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 33 | 5.0 | - |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 320 | 395 | 28.081223 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 334 | 342 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 366 | 395 | 3.2E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 420 | 437 | 3.2E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 214 | 243 | 3.2E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 248 | 277 | 3.2E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 286 | 315 | 3.2E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 331 | 359 | 3.2E-76 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 127 | 452 | 45.251568 | IPR013765 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79050.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_031281410.1 | DNA repair protein recA homolog 1, chloroplastic [Pistacia vera] | 0 |
| Q39199 | DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1 | 0 | |
| TrEMBL | A0A067EHN3 | DNA repair protein recA homolog 1, chloroplastic OS=Citrus sinensis OX=2711 GN=CISIN_1g013567mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology