Basic Information
Locus ID:
evm.TU.LG04.955
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 10774179 | 10783002 | + | evm.TU.LG04.955 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.53 | 48,268.26 Da | 32.70 | 76.82 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 316 | 350 | 1.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 281 | 311 | 0.11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 153 | 189 | 1.3E-4 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 120 | 144 | 8.63E-5 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 155 | 439 | 5.43E-45 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 142 | 208 | 2.4E-9 | IPR015943 |
| Gene3D | G3DSA:3.30.1370.210 | - | 26 | 141 | 7.3E-8 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 209 | 440 | 6.0E-37 | IPR015943 |
| SMART | SM00320 | WD40_4 | 274 | 311 | 9.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 229 | 266 | 3.9 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 120 | 145 | 0.029 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 28 | 51 | 0.0068 | IPR000571 |
| SMART | SM00320 | WD40_4 | 401 | 438 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 355 | 398 | 73.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 150 | 189 | 3.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 314 | 351 | 5.6E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 321 | 360 | 9.606159 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 157 | 198 | 13.415834 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 119 | 146 | 11.572631 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 281 | 314 | 10.311051 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 281 | 320 | 13.582925 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 157 | 189 | 10.469233 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 26 | 52 | 12.821381 | IPR000571 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 298 | 312 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 176 | 190 | 2.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 298 | 312 | 2.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 338 | 352 | 2.5E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 115 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_006491580.2 | zinc finger CCCH domain-containing protein 48-like isoform X2 [Citrus sinensis] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5C7I1G3 | WD_REPEATS_REGION domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_009772 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology