halophFGD

Basic Information

Locus ID: evm.TU.LG04.923

Species & Taxonomic ID: Nitraria sibirica & 357931

Genome Assembly:

Description: E3 ubiquitin-protein ligase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG04	10253851	10256270	-	evm.TU.LG04.923

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.31	42,361.33 Da	61.53	98.21	0.02

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13639	Ring finger domain	318	360	4.3E-12	IPR001841
SUPERFAMILY	SSF57850	RING/U-box	309	366	6.06E-18	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	301	368	9.7E-19	IPR013083
SMART	SM00184	ring_2	319	359	9.9E-7	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	319	360	12.017182	IPR001841

Best hit

Source	Best Hit ID	Description
TAIR	AT3G61180.1	RING/U-box superfamily protein.
RefSeq	XP_031263432.1	E3 ubiquitin-protein ligase At1g63170-like [Pistacia vera]
Swiss-Prot	Q93Z92	E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana OX=3702 GN=At4g11680 PE=2 SV=1
TrEMBL	A0A5C7I288	RING-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_009800 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg1890, jg26856, jg29317, jg5128
Aizoaceae	Mesembryanthemum crystallinum	3	gene_1868, gene_23284, gene_4185
Amaranthaceae	Atriplex hortensis	2	Ah003788, Ah025185
Amaranthaceae	Beta vulgaris	2	BVRB_1g005710, BVRB_5g100910
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg12104, Sbi_jg23724, Sbi_jg41980, Sbi_jg4432 ... Sbi_jg48151, Sbi_jg49343, Sbi_jg7564
Amaranthaceae	Salicornia europaea	3	Seu_jg12469, Seu_jg27501, Seu_jg5856
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000377, GOSA_00001259, GOSA_00016746
Amaranthaceae	Suaeda glauca	6	Sgl11157, Sgl16560, Sgl32443, Sgl36367, Sgl51919, Sgl57214
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000000009, gene:ENSEOMG00000000975 ... gene:ENSEOMG00000004985, gene:ENSEOMG00000015432, gene:ENSEOMG00000022076, gene:ENSEOMG00000022882, gene:ENSEOMG00000025869, gene:ENSEOMG00000033126, gene:ENSEOMG00000047121
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.1AG0005030, CQ.Regalona.r1.2BG0024310 ... CQ.Regalona.r1.5BG0008370, CQ.Regalona.r1.6AG0011780, CQ.Regalona.r1.6BG0012510
Anacardiaceae	Pistacia vera	2	pistato.v30003890, pistato.v30218350
Apiaceae	Apium graveolens	3	Ag6G00594, Ag6G01611, Ag7G00021
Arecaceae	Cocos nucifera	7	COCNU_01G016400, COCNU_07G006940, COCNU_08G002160 ... COCNU_08G006500, COCNU_10G005180, scaffold012178G000020, scaffold023598G000010
Arecaceae	Phoenix dactylifera	8	gene-LOC103698018, gene-LOC103700044, gene-LOC103706808 ... gene-LOC103714161, gene-LOC103715064, gene-LOC103716709, gene-LOC103724148, gene-LOC120108239
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.1736.V1.1, AsparagusV1_06.1599.V1.1 ... AsparagusV1_08.402.V1.1, AsparagusV1_Unassigned.1133.V1.1
Asteraceae	Flaveria trinervia	4	Ftri13G29244, Ftri15G14072, Ftri18G06319, Ftri3G22101
Brassicaceae	Arabidopsis thaliana	6	AT1G12760.1, AT1G63170.1, AT1G68070.1, AT2G01735.1 ... AT3G61180.1, AT4G11680.1
Brassicaceae	Eutrema salsugineum	6	Thhalv10004486m.g.v1.0, Thhalv10006041m.g.v1.0 ... Thhalv10007780m.g.v1.0, Thhalv10018815m.g.v1.0, Thhalv10023515m.g.v1.0, Thhalv10028703m.g.v1.0
Brassicaceae	Schrenkiella parvula	7	Sp1g11320.v2.2, Sp2g01410.v2.2, Sp2g13185.v2.2 ... Sp4g27830.v2.2, Sp5g02190.v2.2, Sp5g23070.v2.2, Sp6g05790.v2.2
Brassicaceae	Brassica nigra	11	BniB02g007610.2N, BniB02g007640.2N, BniB02g058480.2N ... BniB02g065010.2N, BniB03g005290.2N, BniB03g045430.2N, BniB04g027460.2N, BniB05g064550.2N, BniB06g004150.2N, BniB08g049820.2N, BniB08g075290.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq03G0438, Ceq05G0612, Ceq09G0810
Casuarinaceae	Casuarina glauca	4	Cgl03G0541, Cgl05G0632, Cgl09G0871, Cgl09G0891
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno04g10340, gene.Cymno05g13400, gene.Cymno09g01490 ... gene.Cymno11g08680
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g11580, gene.Thate07g00790
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-11265
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.1188, evm.TU.LG04.923, evm.TU.LG10.1357
Plantaginaceae	Plantago ovata	2	Pov_00027676, Pov_00032184
Plumbaginaceae	Limonium bicolor	6	Lb1G03477, Lb1G03484, Lb2G10743, Lb2G10752, Lb2G11000 ... Lb2G13122
Poaceae	Echinochloa crus-galli	12	AH03.1047, AH07.2977, AH07.3379, AH09.1962, BH03.1191 ... BH07.2802, BH07.3215, BH09.2129, CH03.1342, CH07.2878, CH07.3267, CH09.2272
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0144830, gene-QOZ80_2BG0200320 ... gene-QOZ80_4AG0307050, gene-QOZ80_4BG0338050, gene-QOZ80_7AG0566080, gene-QOZ80_UnG0719360
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0187530.1, HORVU.MOREX.r3.6HG0603400.1 ... HORVU.MOREX.r3.6HG0613320.1
Poaceae	Lolium multiflorum	3	gene-QYE76_024987, gene-QYE76_041490, gene-QYE76_045618
Poaceae	Oryza coarctata	7	Oco03G021010, Oco04G018740, Oco04G021650, Oco07G013430 ... Oco08G012970, Oco13G006800, Oco14G007320
Poaceae	Oryza sativa	4	LOC_Os02g45240.1, LOC_Os02g50290.1, LOC_Os04g48050.1 ... LOC_Os07g27950.1
Poaceae	Paspalum vaginatum	4	gene-BS78_02G127200, gene-BS78_03G357700 ... gene-BS78_04G270000, gene-BS78_06G203500
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0203404, Pt_Chr0301623, Pt_Chr0304082, Pt_Chr0307354
Poaceae	Sporobolus alterniflorus	13	Chr06G002800, Chr09G020730, Chr13G004950, Chr15G004160 ... Chr19G006450, Chr19G006550, Chr23G006290, Chr24G006650, Chr25G005220, Chr26G013290, Chr27G010370, Chr28G004910, Chr30G005080
Poaceae	Thinopyrum elongatum	4	Tel2E01G449700, Tel2E01G688300, Tel6E01G476400 ... Tel6E01G539200
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG058010, gene_TRIDC2BG060910 ... gene_TRIDC6AG039310, gene_TRIDC6AG045230, gene_TRIDC6BG046170, gene_TRIDC6BG052850
Poaceae	Triticum aestivum	10	TraesCS2A02G234100.1.cds1, TraesCS2A02G401400.1 ... TraesCS2B02G419400.1, TraesCS2D02G398700.1, TraesCS6A02G255700.1, TraesCS6A02G298300.1, TraesCS6B02G269900.1, TraesCS6B02G327800.1, TraesCS6D02G236900.1, TraesCS6D02G278100.1
Poaceae	Zea mays	10	Zm00001eb073720_P001, Zm00001eb096500_P001 ... Zm00001eb187140_P001, Zm00001eb190380_P001, Zm00001eb241830_P001, Zm00001eb250410_P001, Zm00001eb253840_P004, Zm00001eb306680_P003, Zm00001eb336570_P001, Zm00001eb428770_P001
Poaceae	Zoysia japonica	5	nbis-gene-21925, nbis-gene-22583, nbis-gene-45921 ... nbis-gene-50882, nbis-gene-5589
Poaceae	Zoysia macrostachya	6	Zma_g14378, Zma_g17093, Zma_g20258, Zma_g21805, Zma_g22771 ... Zma_g5102
Portulacaceae	Portulaca oleracea	9	evm.TU.LG04.2338, evm.TU.LG10.304, evm.TU.LG13.875 ... evm.TU.LG16.277, evm.TU.LG17.301, evm.TU.LG17.302, evm.TU.LG19.956, evm.TU.LG21.540, evm.TU.LG24.960
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g24670, gene.Posoc01g28510, gene.Posoc08g01050 ... gene.Posoc08g01660
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_14_RagTag.221, evm.TU.Scaffold_15_RagTag.247 ... evm.TU.Scaffold_16_RagTag.215, evm.TU.Scaffold_17_RagTag.762, evm.TU.Scaffold_9_RagTag.402
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-18158, nbisL1-mrna-22460, nbisL1-mrna-23470 ... nbisL1-mrna-26469
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-20979, nbisL1-mrna-6256, nbisL1-mrna-9701
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-17566, nbisL1-mrna-20053, nbisL1-mrna-20292 ... nbisL1-mrna-8489
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000001l.152, evm.TU.utg000003l.295 ... evm.TU.utg000007l.239, evm.TU.utg000013l.419, evm.TU.utg000022l.360
Rhizophoraceae	Kandelia obovata	5	Maker00004464, Maker00004636, Maker00009519, Maker00014480 ... Maker00018333
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-10813, nbisL1-mrna-11571, nbisL1-mrna-16064 ... nbisL1-mrna-3504, nbisL1-mrna-6891
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-10859, nbisL1-mrna-12746, nbisL1-mrna-14276 ... nbisL1-mrna-6651
Salicaceae	Populus euphratica	5	populus_peu07215, populus_peu21213, populus_peu27792 ... populus_peu31703, populus_peu34356
Solanaceae	Lycium barbarum	4	gene-LOC132603853, gene-LOC132613685, gene-LOC132640711 ... gene-LOC132645680
Solanaceae	Solanum chilense	4	SOLCI003966300, SOLCI006372100, SOLCI007022300 ... SOLCI007430300
Solanaceae	Solanum pennellii	3	gene-LOC107005323, gene-LOC107011029, gene-LOC107020893
Tamaricaceae	Reaumuria soongarica	5	STRG.15212_chr06_-, STRG.29142_chr11_-, STRG.8170_chr05_- ... gene_10194, gene_8996
Tamaricaceae	Tamarix chinensis	5	TC01G3637, TC03G2478, TC04G0089, TC09G2169, TC10G1192
Zosteraceae	Zostera marina	3	Zosma01g30360.v3.1, Zosma03g35710.v3.1, Zosma06g08310.v3.1