Basic Information
Locus ID:
evm.TU.LG04.9
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 142985 | 149869 | - | evm.TU.LG04.9 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.51 | 168,487.16 Da | 41.90 | 105.81 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1254 | 1474 | 1.39732E-122 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 626 | 826 | 9.78811E-106 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 937 | 1231 | 3.56882E-92 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 312 | 600 | 1.48016E-102 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 312 | 579 | 2.0E-30 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 644 | 778 | 4.2E-19 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 951 | 1183 | 1.4E-33 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1273 | 1421 | 3.1E-29 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 618 | 842 | 1.16E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 306 | 611 | 2.35E-37 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 937 | 1236 | 4.32E-50 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1248 | 1486 | 9.67E-67 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 899 | 1237 | 1.3E-55 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 282 | 610 | 4.7E-52 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1239 | 1492 | 5.0E-80 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 624 | 855 | 3.6E-69 | IPR027417 |
| SMART | SM00382 | AAA_5 | 653 | 826 | 8.7E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1282 | 1474 | 9.7E-14 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1256 | 1490 | 17.080301 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 626 | 849 | 22.762545 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 939 | 1219 | 34.976254 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 311 | 592 | 36.955612 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 751 | 765 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 895 | 913 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 865 | 894 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 865 | 913 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_021296204.1 | putative ABC transporter C family member 15 isoform X2 [Herrania umbratica] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5C7HZT6 | ABC-type xenobiotic transporter OS=Acer yangbiense OX=1000413 GN=EZV62_009434 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology