Basic Information
Locus ID:
evm.TU.LG04.789
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Putative S-adenosyl-L-methionine-dependent methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 8472076 | 8476455 | - | evm.TU.LG04.789 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.18 | 76,098.51 Da | 42.80 | 86.08 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 131 | 174 | 6.15581E-18 | - |
| Pfam | PF13639 | Ring finger domain | 131 | 174 | 6.1E-11 | IPR001841 |
| Pfam | PF03141 | Putative S-adenosyl-L-methionine-dependent methyltransferase | 513 | 618 | 2.5E-5 | IPR004159 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 434 | 628 | 1.3E-10 | IPR029063 |
| SUPERFAMILY | SSF57850 | RING/U-box | 131 | 183 | 1.16E-19 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 500 | 652 | 1.6E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 80 | 178 | 2.9E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 132 | 173 | 1.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 132 | 174 | 12.149959 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G01240.1 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein. | 0 |
| RefSeq | XP_021280641.1 | LOW QUALITY PROTEIN: uncharacterized protein LOC110413937 [Herrania umbratica] | 0 |
| O82353 | RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J1A1G4 | LOW QUALITY PROTEIN: uncharacterized protein LOC110413937 OS=Herrania umbratica OX=108875 GN=LOC110413937 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1962, jg26570 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11989 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005772 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g081150 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17101, Sbi_jg61649 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg364 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015323 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000011953, gene:ENSEOMG00000026049 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0008410, CQ.Regalona.r1.4BG0008520 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30005080, pistato.v30083590, pistato.v30192800 |
| Apiaceae | Apium graveolens | 2 | Ag1G00516, Ag6G00016 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G010700, COCNU_05G010710 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703787, gene-LOC103718547 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_01.1863.V1.1, AsparagusV1_01.2734.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G18704, Ftri15G28087 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G05390.1, AT4G01240.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10020681m.g.v1.0, Thhalv10028611m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g04250.v2.2, Sp6g00880.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g058200.2N, BniB05g059370.2N, BniB07g062420.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G1201, Ceq06G1190 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G1241, Cgl06G1244 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g10590 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g07660 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6517 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.2453, evm.TU.LG04.789 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00039258, Pov_00039275 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06683 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.1515, BH06.1503, CH06.1650 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0520610, gene-QOZ80_6BG0473090 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0677200.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_029774 |
| Poaceae | Oryza coarctata | 1 | Oco11G009080 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g27980.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K081300 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G002660, Chr11G016140 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G420300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG030190, gene_TRIDC7BG020980 |
| Poaceae | Triticum aestivum | 2 | TraesCS7A02G234400.1.cds1, TraesCS7B02G132700.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb260260_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43799 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31873 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG14.1866, evm.TU.LG18.1237, evm.TU.LG20.646 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g25120, gene.Posoc08g13580 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_6_RagTag.395, evm.TU.Scaffold_6_RagTag.396 |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-10783, nbisL1-mrna-10801, nbisL1-mrna-15263 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5118 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5217 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18848 |
| Salicaceae | Populus euphratica | 3 | populus_peu09375, populus_peu15715, populus_peu31617 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132600082, gene-LOC132634022, gene-LOC132645519 |
| Solanaceae | Solanum chilense | 3 | SOLCI001805600, SOLCI001845500, SOLCI004312300 |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107014185, gene-LOC107015996, gene-LOC107016023 ... |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_1398, gene_17069, gene_6393 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G0928, TC02G1475, TC03G2184 |
| Zosteraceae | Zostera marina | 6 | Zosma01g01860.v3.1, Zosma02g07540.v3.1, Zosma02g08700.v3.1 ... |