Basic Information
Locus ID:
evm.TU.LG04.712
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Transcriptional corepressor LEUNIG-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 11402350 | 11407151 | - | evm.TU.LG04.712 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 70,453.80 Da | 51.86 | 69.97 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 354 | 633 | 6.95447E-53 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 514 | 548 | 0.0063 | IPR001680 |
| Pfam | PF08513 | LisH | 18 | 37 | 9.0E-5 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 351 | 382 | 6.8E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 393 | 424 | 0.0019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 600 | 632 | 0.28 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 344 | 632 | 7.94E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 474 | 633 | 1.5E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 321 | 473 | 6.1E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 594 | 633 | 0.036 | IPR001680 |
| SMART | SM00320 | WD40_4 | 343 | 382 | 2.5E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 552 | 591 | 7.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 385 | 424 | 1.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 428 | 468 | 2.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 510 | 548 | 0.0013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 471 | 507 | 64.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 601 | 633 | 11.845179 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 392 | 424 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 9 | 41 | 8.684448 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 350 | 385 | 9.915599 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 601 | 633 | 11.207411 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 435 | 477 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 350 | 391 | 12.279615 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 392 | 424 | 10.574686 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 369 | 383 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 411 | 425 | 6.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 620 | 633 | 6.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 369 | 383 | 6.0E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 167 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32551.1 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain. LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. | 0 |
| RefSeq | XP_010686452.1 | transcriptional corepressor LEUNIG isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FUY2 | Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9RWK8 | LisH domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_026770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology