Basic Information
Locus ID:
evm.TU.LG04.644
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Short Name:
RPL18
Description:
60S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 10702036 | 10709910 | - | evm.TU.LG04.644 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.34 | 41,522.99 Da | 42.77 | 90.82 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 91 | 134 | 1.44824E-20 | - |
| Pfam | PF17135 | Ribosomal protein 60S L18 and 50S L18e | 193 | 378 | 5.0E-95 | IPR021131 |
| Pfam | PF13639 | Ring finger domain | 91 | 134 | 3.2E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 86 | 140 | 2.36E-21 | - |
| SUPERFAMILY | SSF52080 | Ribosomal proteins L15p and L18e | 211 | 330 | 1.2E-26 | IPR036227 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 142 | 8.4E-21 | IPR013083 |
| Gene3D | G3DSA:3.100.10.10 | - | 192 | 378 | 1.3E-101 | - |
| SMART | SM00184 | ring_2 | 92 | 133 | 2.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 92 | 134 | 13.182669 | IPR001841 |
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27850.1 | Ribosomal protein L18e/L15 superfamily protein. | 0 |
| RefSeq | XP_010684349.1 | 60S ribosomal protein L18-2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q940B0 | Large ribosomal subunit protein eL18x OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1 | 0 | |
| TrEMBL | A0A803M9I3 | Ribosomal_L18e/L15P domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology