Basic Information
Locus ID:
evm.TU.LG04.61
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 589295 | 592646 | + | evm.TU.LG04.61 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 39,262.78 Da | 71.04 | 73.94 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05773 | RWD domain | 4 | 105 | 4.1E-11 | IPR006575 |
| SUPERFAMILY | SSF57850 | RING/U-box | 113 | 164 | 9.89E-7 | - |
| SUPERFAMILY | SSF54495 | UBC-like | 3 | 106 | 6.04E-17 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 116 | 4.8E-20 | IPR016135 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 117 | 223 | 5.8E-19 | IPR013083 |
| SMART | SM00591 | RWD2001b | 8 | 114 | 3.3E-16 | IPR006575 |
| SMART | SM00184 | ring_2 | 121 | 204 | 1.5E-5 | IPR001841 |
| ProSiteProfiles | PS50908 | RWD domain profile. | 8 | 114 | 16.731251 | IPR006575 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 121 | 205 | 9.405901 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 348 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 348 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60300.1 | RWD domain-containing protein. | 0 |
| RefSeq | XP_006445436.1 | uncharacterized protein LOC18048886 [Citrus clementina] | 0 |
| TrEMBL | A0A067H3J8 | E3 ubiquitin-protein ligase RNF25 OS=Citrus sinensis OX=2711 GN=CISIN_1g018975mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1754 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1293 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023318 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29156, Sbi_jg3376 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6568 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000159 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11419, Sgl16799 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015657, gene:ENSEOMG00000035062 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0007450, CQ.Regalona.r1.2BG0022080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30001710 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G004970, COCNU_07G004980 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713599 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.776.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G02137 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G60300.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006060m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g02920.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g062650.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1054 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1058 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g04830 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0625s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g03110 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-4489, nbisL1-mrna-6078 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.61 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032394 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.15, AH04.1666, BH04.1661, CH04.1896 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0685250, gene-QOZ80_9BG0711360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0367140.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_066528 |
| Poaceae | Oryza coarctata | 1 | Oco22G008480 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g35870.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G181100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103133 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G005740, Chr17G005150 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G304000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG022150, gene_TRIDC4BG029670 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G146300.1, TraesCS4B02G156000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb200010_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-45777 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18972 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.1010 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g29120 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.245 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19475 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2606 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7043 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000028l.147 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010379 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8889 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24340 |
| Salicaceae | Populus euphratica | 1 | populus_peu31877 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645799 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002263 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G2447 |
| Zosteraceae | Zostera marina | 1 | Zosma01g07640.v3.1 |