Basic Information
Locus ID:
evm.TU.LG04.584
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 10053508 | 10058107 | - | evm.TU.LG04.584 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 32,665.12 Da | 47.50 | 56.00 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 215 | 272 | 4.0E-26 | IPR039512 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 168 | 210 | 4.6E-7 | - |
| Pfam | PF05495 | CHY zinc finger | 33 | 113 | 7.0E-21 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 29 | 102 | 1.11E-18 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 167 | 215 | 6.8E-11 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 104 | 161 | 1.01E-19 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 240 | 1.9E-11 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 241 | 280 | 2.7E-18 | - |
| SMART | SM00184 | ring_2 | 168 | 210 | 2.7E-6 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 26 | 101 | 25.866381 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 103 | 167 | 31.966391 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 168 | 211 | 11.987676 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62970.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_021851771.1 | E3 ubiquitin-protein ligase MIEL1-like [Spinacia oleracea] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RX36 | RING finger and CHY zinc finger domain-containing protein 1 OS=Spinacia oleracea OX=3562 GN=SOVF_019950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology