Basic Information
Locus ID:
evm.TU.LG04.547
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Protein translocase subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 5453823 | 5466686 | + | evm.TU.LG04.547 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 116,031.84 Da | 40.81 | 89.78 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17928 | DEXDc_SecA | 107 | 470 | 6.05571E-132 | - |
| CDD | cd18803 | SF2_C_secA | 476 | 737 | 1.0624E-68 | IPR044722 |
| Pfam | PF01043 | SecA preprotein cross-linking domain | 308 | 414 | 1.3E-35 | IPR011130 |
| Pfam | PF07517 | SecA DEAD-like domain | 80 | 458 | 1.9E-121 | IPR011115 |
| Pfam | PF07516 | SecA Wing and Scaffold domain | 764 | 979 | 7.5E-54 | IPR011116 |
| SUPERFAMILY | SSF81767 | Pre-protein crosslinking domain of SecA | 302 | 424 | 1.44E-43 | IPR036670 |
| SUPERFAMILY | SSF81886 | Helical scaffold and wing domains of SecA | 767 | 989 | 1.96E-60 | IPR036266 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 83 | 471 | 5.43E-72 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 473 | 761 | 3.44E-49 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 473 | 766 | 4.1E-84 | IPR027417 |
| Gene3D | G3DSA:1.10.3060.10 | Helical scaffold and wing domains of SecA | 768 | 981 | 1.7E-55 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 88 | 472 | 3.5E-173 | IPR027417 |
| Gene3D | G3DSA:3.90.1440.10 | - | 304 | 424 | 3.5E-173 | - |
| SMART | SM00957 | SecA_DEAD_2 | 72 | 458 | 7.1E-250 | IPR011115 |
| SMART | SM00958 | SecA_PP_bind_2 | 303 | 414 | 5.6E-58 | IPR011130 |
| TIGRFAM | TIGR00963 | secA: preprotein translocase, SecA subunit | 93 | 968 | 0.0 | IPR000185 |
| ProSiteProfiles | PS51196 | SecA family profile. | 68 | 767 | 154.047241 | IPR014018 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 154 | 322 | 16.991392 | IPR014001 |
| ProSitePatterns | PS01312 | SecA family signature. | 558 | 573 | - | IPR020937 |
| PRINTS | PR00906 | SecA protein signature | 182 | 192 | 3.3E-70 | IPR000185 |
| PRINTS | PR00906 | SecA protein signature | 432 | 449 | 3.3E-70 | IPR000185 |
| PRINTS | PR00906 | SecA protein signature | 235 | 255 | 3.3E-70 | IPR000185 |
| PRINTS | PR00906 | SecA protein signature | 166 | 180 | 3.3E-70 | IPR000185 |
| PRINTS | PR00906 | SecA protein signature | 395 | 417 | 3.3E-70 | IPR000185 |
| PRINTS | PR00906 | SecA protein signature | 469 | 482 | 3.3E-70 | IPR000185 |
| PRINTS | PR00906 | SecA protein signature | 128 | 152 | 3.3E-70 | IPR000185 |
| Hamap | MF_01382 | Protein translocase subunit SecA [secA]. | 68 | 982 | 19.099468 | IPR000185 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 988 | 1024 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 995 | 1024 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G01800.1 | Albino or Glassy Yellow 1. Encodes the ATPase subunit of the chloroplast Sec translocation machinery which plays an essential role in chloroplast biogenesis and the regulation of photosynthesis, the absence of which triggers a retrograde signal, eventually leading to a reprogramming of chloroplast and mitochondrial gene expression. | 0 |
| RefSeq | XP_031284612.1 | protein translocase subunit SECA1, chloroplastic [Pistacia vera] | 0 |
| Q9SYI0 | Protein translocase subunit SECA1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SECA1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2H5NY80 | Protein translocase subunit SecA OS=Citrus unshiu OX=55188 GN=CUMW_085780 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10458, jg9019 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1077, gene_13408 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah024121, Ah031607 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g010050, BVRB_5g122730 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg2775, Sbi_jg28369, Sbi_jg31191, Sbi_jg58082 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg25704, Seu_jg7111 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004576, GOSA_00020180 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl11665, Sgl17164, Sgl54639, Sgl59975 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000011856, gene:ENSEOMG00000013510 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0012840, CQ.Regalona.r1.1BG0013100 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30007280, pistato.v30039110 |
| Apiaceae | Apium graveolens | 3 | Ag11G03939, Ag6G02443, Ag9G02368 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G000270, COCNU_15G003170 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701417, gene-LOC103720122 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.2259.V1.1, AsparagusV1_07.3638.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G32559, Ftri18G11286 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G21650.3, AT4G01800.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006535m.g.v1.0, Thhalv10028392m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g19170.v2.2, Sp6g01650.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g009290.2N, BniB08g040660.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1867, Ceq06G0547 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G2007, Cgl06G0567 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g06910, gene.Cymno08g07140 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0027s00037.v1.0, Dusal.0035s00032.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g16040, gene.Thate05g12950 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.547, evm.TU.LG06.839 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00016539, Pov_00021694 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G22942, Lb6G30841 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.1497, BH02.1573, BH04.644, CH02.1719, CH04.655 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0015110, gene-QOZ80_1BG0063980 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0259100.1, HORVU.MOREX.r3.4HG0347020.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_052738, gene-QYE76_059523, gene-QYE76_064524 |
| Poaceae | Oryza coarctata | 3 | Oco01G009280, Oco02G009570, Oco22G003520 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g21820.1, LOC_Os11g08980.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G139800, gene-BS78_05G097000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103927, Pt_Chr0603665 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G022280, Chr05G013160, Chr05G013200, Chr05G013210 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G338700, Tel4E01G158600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG028190, gene_TRIDC3BG032070 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G198400.1, TraesCS3B02G222700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb090990_P001, Zm00001eb130760_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-27238, nbis-gene-6517 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10242, Zma_g18533 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.1549, evm.TU.LG10.1366, evm.TU.LG11.1721 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g13940, gene.Posoc05g18660 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.729, evm.TU.Scaffold_7_RagTag.1138 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10616, nbisL1-mrna-18708 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-103, nbisL1-mrna-5559 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11369, nbisL1-mrna-13125 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.412, evm.TU.utg000006l.609 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00011737, Maker00013085 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10163, nbisL1-mrna-8110 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-7364, nbisL1-mrna-9803 |
| Salicaceae | Populus euphratica | 2 | populus_peu27429, populus_peu32459 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132627149, gene-LOC132644885 |
| Solanaceae | Solanum chilense | 2 | SOLCI001197400, SOLCI003112400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002391, gene-LOC107004481 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_17557, gene_866 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2545, TC07G1717 |
| Zosteraceae | Zostera marina | 4 | Zosma03g36860.v3.1, Zosma03g36910.v3.1, Zosma06g28380.v3.1 ... |