Basic Information
Locus ID:
evm.TU.LG04.402
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Short Name:
CMT1
Description:
DNA (cytosine-5)-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 7408382 | 7421204 | - | evm.TU.LG04.402 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 92,380.26 Da | 40.10 | 75.85 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 361 | 417 | 9.86262E-31 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 423 | 784 | 1.1E-29 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 363 | 415 | 2.7E-10 | IPR023780 |
| Pfam | PF01426 | BAH domain | 95 | 196 | 1.8E-13 | IPR001025 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 255 | 784 | 2.44E-72 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 349 | 416 | 5.5E-14 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 257 | 349 | 2.8E-31 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 580 | 753 | 1.4E-204 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 361 | 804 | 1.4E-204 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 24 | 191 | 1.7E-49 | IPR043151 |
| SMART | SM00439 | BAH_4 | 87 | 206 | 1.3E-13 | IPR001025 |
| SMART | SM00298 | chromo_7 | 361 | 420 | 2.7E-8 | IPR000953 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 362 | 415 | 12.937601 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 87 | 206 | 17.88282 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 255 | 794 | 43.196072 | IPR001525 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 385 | 405 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 475 | 489 | 1.4E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 256 | 272 | 1.4E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 521 | 534 | 1.4E-10 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 247 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 241 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_010666617.2 | putative DNA (cytosine-5)-methyltransferase CMT1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9AXT8 | DNA (cytosine-5)-methyltransferase 1 OS=Zea mays OX=4577 GN=MET2A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8B4R8 | DNA (cytosine-5-)-methyltransferase OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_003270 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology