Basic Information
Locus ID:
evm.TU.LG04.376
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 3715154 | 3719549 | + | evm.TU.LG04.376 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 41,255.46 Da | 41.32 | 83.64 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 114 | 157 | 1.84934E-17 | - |
| Pfam | PF04043 | Plant invertase/pectin methylesterase inhibitor | 224 | 361 | 7.7E-22 | IPR006501 |
| Pfam | PF13639 | Ring finger domain | 114 | 157 | 4.7E-12 | IPR001841 |
| SUPERFAMILY | SSF101148 | Plant invertase/pectin methylesterase inhibitor | 223 | 366 | 3.53E-25 | IPR035513 |
| SUPERFAMILY | SSF57850 | RING/U-box | 93 | 169 | 1.01E-21 | - |
| Gene3D | G3DSA:1.20.140.40 | Invertase/pectin methylesterase inhibitor family protein | 222 | 368 | 1.0E-27 | IPR035513 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 77 | 162 | 1.8E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 115 | 156 | 9.5E-7 | IPR001841 |
| SMART | SM00856 | PMEI_2 | 221 | 363 | 2.9E-22 | IPR006501 |
| TIGRFAM | TIGR01614 | PME_inhib: pectinesterase inhibitor domain | 213 | 365 | 3.1E-31 | IPR006501 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 115 | 157 | 12.533537 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 202 | - | - |
| Coils | Coil | Coil | 297 | 317 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62690.1 | AtL5. Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end. | 0 |
| RefSeq | XP_048442931.1 | LOW QUALITY PROTEIN: RING-H2 finger protein ATL64-like [Pyrus x bretschneideri] | 0 |
| Q9LZJ6 | RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A6MS72 | RING-type domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_037627 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology