Basic Information
Locus ID:
evm.TU.LG04.3288
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 52030109 | 52036874 | - | evm.TU.LG04.3288 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 111,717.54 Da | 46.46 | 73.16 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 781 | 818 | 2.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 872 | 903 | 0.023 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 267 | 539 | 1.07E-13 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 696 | 1008 | 4.89E-52 | IPR036322 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 267 | 544 | 2.2E-19 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 670 | 1011 | 1.4E-127 | IPR015943 |
| SMART | SM00320 | WD40_4 | 865 | 903 | 3.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 737 | 776 | 0.75 | IPR001680 |
| SMART | SM00320 | WD40_4 | 779 | 819 | 2.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 914 | 953 | 15.0 | IPR001680 |
| SMART | SM00220 | serkin_6 | 182 | 537 | 0.002 | IPR000719 |
| SMART | SM00320 | WD40_4 | 822 | 861 | 2.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 970 | 1009 | 95.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 682 | 726 | 1.1 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 872 | 912 | 13.181907 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 786 | 828 | 12.145943 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 786 | 821 | 9.230148 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 743 | 785 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 872 | 905 | 10.548323 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 890 | 904 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 763 | 777 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 763 | 777 | 1.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 890 | 904 | 1.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 806 | 820 | 1.3E-5 | IPR020472 |
| Coils | Coil | Coil | 577 | 597 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_021757615.1 | protein SPA1-RELATED 2-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QJF8 | WD_REPEATS_REGION domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_178660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology