Basic Information
Locus ID:
evm.TU.LG04.3257
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 51727541 | 51730621 | + | evm.TU.LG04.3257 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 37,137.87 Da | 52.17 | 71.30 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 181 | 309 | 3.62388E-65 | - |
| CDD | cd16571 | RING-HC_SIAHs | 65 | 103 | 9.89323E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 109 | 308 | 1.8E-77 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 56 | 109 | 4.42E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 120 | 312 | 1.24E-46 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 120 | 175 | 2.0E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 119 | 1.6E-7 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 176 | 308 | 9.0E-38 | IPR008974 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 67 | 103 | 9.317383 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 120 | 180 | 13.955132 | IPR013010 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 50 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_021846633.1 | E3 ubiquitin-protein ligase SINAT5-like [Spinacia oleracea] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9FRX1 | RING-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology