Basic Information
Locus ID:
evm.TU.LG04.314
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Autophagy-related protein 18a-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 3168490 | 3172669 | + | evm.TU.LG04.314 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 47,656.23 Da | 47.64 | 77.64 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 297 | 328 | 0.0012 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 83 | 330 | 3.51E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 85 | 361 | 2.8E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 287 | 328 | 0.0077 | IPR001680 |
| SMART | SM00320 | WD40_4 | 244 | 284 | 0.012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 71 | 109 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 162 | 197 | 350.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 52 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_006444270.1 | autophagy-related protein 18a [Citrus clementina] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | V4U0E1 | Autophagy-related protein 18a-like OS=Citrus clementina OX=85681 GN=CICLE_v10023707mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology