Basic Information
Locus ID:
evm.TU.LG04.2961
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 48254007 | 48267003 | + | evm.TU.LG04.2961 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 138,291.53 Da | 56.49 | 72.41 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 779 | 834 | 6.12947E-31 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 844 | 1200 | 4.5E-39 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 793 | 833 | 1.4E-11 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 773 | 839 | 2.92E-12 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 672 | 1200 | 8.13E-79 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 779 | 1217 | 1.1E-209 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 657 | 760 | 3.2E-12 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 453 | 617 | 2.1E-45 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 999 | 1166 | 1.1E-209 | - |
| SMART | SM00298 | chromo_7 | 779 | 838 | 2.3E-8 | IPR000953 |
| SMART | SM00439 | BAH_4 | 516 | 632 | 2.8E-18 | IPR001025 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 848 | 1197 | 2.4E-32 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 780 | 833 | 13.118601 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 516 | 632 | 17.469633 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 673 | 1207 | 46.804825 | IPR001525 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 803 | 823 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 850 | 862 | - | IPR018117 |
| ProSitePatterns | PS00095 | C-5 cytosine-specific DNA methylases C-terminal signature. | 1182 | 1200 | - | IPR031303 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 893 | 907 | 2.4E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 939 | 952 | 2.4E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 674 | 690 | 2.4E-10 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 452 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 172 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_021765549.1 | DNA (cytosine-5)-methyltransferase CMT3-like [Chenopodium quinoa] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A0K9RVU1 | Cytosine-specific methyltransferase OS=Spinacia oleracea OX=3562 GN=SOVF_028590 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology