Basic Information
Locus ID:
evm.TU.LG04.2748
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 45757925 | 45760623 | + | evm.TU.LG04.2748 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 31,870.89 Da | 50.52 | 65.45 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 28 | 70 | 1.4E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 22 | 77 | 2.43E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 13 | 80 | 3.3E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 30 | 70 | 1.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 30 | 70 | 12.297489 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 147 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 164 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22000.1 | RING-H2 group F2A. encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses. | 0 |
| RefSeq | XP_042946654.1 | E3 ubiquitin-protein ligase RHF2A-like [Carya illinoinensis] | 0 |
| Q9ZT42 | E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8YXC9 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5AG0011470 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr04G030200 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2BG090510 |
| Poaceae | Zea mays | 1 | Zm00001eb296960_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-44220, nbis-gene-45785 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2748, evm.TU.LG08.408 |