Basic Information
Locus ID:
evm.TU.LG04.273
Species & Taxonomic ID:
Nitraria sibirica & 357931
Short Name:
TIR1
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 2695542 | 2698626 | + | evm.TU.LG04.273 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 65,374.90 Da | 51.71 | 96.61 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 5 | 44 | 1.3E-20 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 63 | 109 | 1.7E-24 | IPR041101 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 37 | 1.13E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 66 | 531 | 1.67E-36 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 42 | 5.6E-21 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 43 | 573 | 2.2E-179 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 101 | 125 | 720.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 368 | 392 | 1.6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 126 | 151 | 110.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 6 | 47 | 4.6E-7 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 428 | 451 | 78.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 310 | 333 | 520.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 477 | 501 | 56.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_006479877.1 | protein TRANSPORT INHIBITOR RESPONSE 1 [Citrus sinensis] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | D0ES26 | Transport inhibitor response 1 OS=Dimocarpus longan OX=128017 GN=TIR1 PE=2 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology