Basic Information
Locus ID:
evm.TU.LG04.2613
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 44039251 | 44052040 | - | evm.TU.LG04.2613 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.71 | 42,810.48 Da | 47.60 | 80.93 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14382 | UBA2_RAD23_plant | 349 | 391 | 3.95018E-24 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 165 | 214 | 2.80338E-30 | - |
| CDD | cd01805 | Ubl_Rad23 | 29 | 102 | 1.57386E-29 | - |
| Pfam | PF00240 | Ubiquitin family | 31 | 104 | 3.5E-16 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 352 | 388 | 7.9E-12 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 172 | 209 | 4.6E-15 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 272 | 327 | 6.5E-23 | IPR015360 |
| SUPERFAMILY | SSF46934 | UBA-like | 332 | 394 | 1.84E-15 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 154 | 214 | 5.75E-12 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 269 | 335 | 9.16E-23 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 29 | 113 | 1.04E-21 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 23 | 105 | 1.6E-26 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 344 | 392 | 2.9E-24 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 262 | 328 | 7.2E-28 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 164 | 214 | 9.2E-21 | - |
| SMART | SM00727 | CBM | 270 | 313 | 1.6E-5 | IPR006636 |
| SMART | SM00213 | ubq_7 | 29 | 103 | 1.7E-22 | IPR000626 |
| SMART | SM00165 | uba_6 | 171 | 211 | 2.6E-7 | IPR015940 |
| SMART | SM00165 | uba_6 | 353 | 390 | 1.7E-8 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 29 | 396 | 5.4E-129 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 351 | 391 | 15.727711 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 169 | 212 | 13.41439 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 29 | 107 | 18.214331 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 364 | 378 | 1.5E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 298 | 320 | 1.5E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 347 | 363 | 1.5E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 379 | 394 | 1.5E-32 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 152 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_010695313.1 | probable ubiquitin receptor RAD23a isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84L32 | Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana OX=3702 GN=RAD23A PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C8Z7R0 | Ubiquitin receptor RAD23 OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology