Basic Information
Locus ID:
evm.TU.LG04.2579
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 43534248 | 43548064 | - | evm.TU.LG04.2579 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 87,631.78 Da | 52.97 | 83.63 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10845 | DSRM_RNAse_III_family | 645 | 704 | 1.84309E-10 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 137 | 356 | 1.6E-7 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 665 | 704 | 2.3E-6 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 644 | 706 | 3.31E-13 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 125 | 381 | 3.82E-19 | IPR036412 |
| Gene3D | G3DSA:3.40.50.1000 | - | 124 | 411 | 1.4E-27 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 640 | 711 | 2.8E-10 | - |
| SMART | SM00577 | forpap2 | 189 | 365 | 6.8E-15 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 643 | 707 | 9.5E-9 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 130 | 378 | 16.357355 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 642 | 708 | 13.349129 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 762 | 787 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 587 | 610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 787 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_021854600.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Spinacia oleracea] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9RJ10 | protein-serine/threonine phosphatase OS=Spinacia oleracea OX=3562 GN=SOVF_067230 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology