Basic Information
Locus ID:
evm.TU.LG04.2541
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 43078131 | 43097164 | - | evm.TU.LG04.2541 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 56,376.03 Da | 52.73 | 79.88 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 322 | 499 | 1.74169E-114 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 13 | 103 | 1.9E-11 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 321 | 428 | 6.1E-17 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 324 | 455 | 2.48E-19 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 314 | 499 | 2.6E-71 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 2 | 127 | 2.7E-31 | - |
| SMART | SM00232 | pad1_6 | 324 | 452 | 2.6E-13 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 325 | 455 | 27.365774 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 317 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_021750517.1 | AMSH-like ubiquitin thioesterase 3 [Chenopodium quinoa] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9ELE0 | MPN domain-containing protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology