Basic Information
Locus ID:
evm.TU.LG04.235
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 4700818 | 4716101 | - | evm.TU.LG04.235 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 233,708.55 Da | 44.98 | 94.69 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 312 | 599 | 2.79047E-110 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1266 | 1486 | 4.17768E-124 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 625 | 824 | 1.6066E-106 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 949 | 1243 | 4.19287E-98 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 643 | 777 | 9.4E-20 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1285 | 1433 | 8.8E-30 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 952 | 1193 | 4.3E-27 | IPR011527 |
| Pfam | PF03016 | Exostosin family | 1624 | 1961 | 6.4E-89 | IPR040911 |
| Pfam | PF00664 | ABC transporter transmembrane region | 315 | 579 | 7.5E-33 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 948 | 1248 | 7.98E-52 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 292 | 603 | 3.14E-42 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 621 | 847 | 5.22E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1258 | 1499 | 1.78E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 603 | 869 | 2.9E-76 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1252 | 1503 | 8.6E-81 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 299 | 602 | 3.6E-55 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 910 | 1248 | 2.1E-61 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1294 | 1479 | 1.3E-15 | IPR003593 |
| SMART | SM00382 | AAA_5 | 652 | 833 | 4.6E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1268 | 1502 | 18.074026 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 627 | 848 | 23.222727 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 951 | 1221 | 36.189346 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 314 | 591 | 39.596657 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 750 | 764 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1557 | 1595 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2048 | 2079 | - | - |
| Coils | Coil | Coil | 903 | 927 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_021848338.1 | ABC transporter C family member 5-like [Spinacia oleracea] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9RT29 | ABC-type xenobiotic transporter OS=Spinacia oleracea OX=3562 GN=SOVF_038270 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology