Basic Information
Locus ID:
evm.TU.LG04.2343
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 44894396 | 44895999 | - | evm.TU.LG04.2343 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.38 | 35,247.43 Da | 40.22 | 89.63 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 23 | 55 | 3.0E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 66 | 1.44E-11 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 130 | 262 | 3.06E-6 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 59 | 1.0E-6 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 21 | 76 | 9.364997 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02920.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_044466597.1 | F-box/LRR-repeat protein At3g26922-like [Mangifera indica] | 0 |
| Q1PE04 | F-box/LRR-repeat protein 25 OS=Arabidopsis thaliana OX=3702 GN=FBL25 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5C7HG24 | F-box domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_020881 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30025950 |
| Nitrariaceae | Nitraria sibirica | 10 | evm.TU.LG01.220, evm.TU.LG01.266, evm.TU.LG03.1934 ... |