Basic Information
Locus ID:
evm.TU.LG04.2342
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 44879650 | 44882478 | - | evm.TU.LG04.2342 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.96 | 50,682.63 Da | 49.04 | 85.84 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 21 | 59 | 4.8E-7 | IPR001810 |
| SUPERFAMILY | SSF52058 | L domain-like | 95 | 298 | 2.89E-12 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 20 | 92 | 3.27E-10 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 58 | 319 | 5.1E-11 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 57 | 1.1E-5 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 19 | 53 | 8.782121 | IPR001810 |
| Coils | Coil | Coil | 363 | 401 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22720.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_031259014.1 | F-box/FBD/LRR-repeat protein At3g26920-like [Pistacia vera] | 0 |
| Q9FNI9 | Putative FBD-associated F-box protein At5g22720 OS=Arabidopsis thaliana OX=3702 GN=At5g22720 PE=4 SV=2 | 0 | |
| TrEMBL | A0A5C7HFX2 | F-box domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_020894 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30025950 |
| Nitrariaceae | Nitraria sibirica | 10 | evm.TU.LG01.220, evm.TU.LG01.266, evm.TU.LG03.1934 ... |