Basic Information
Locus ID:
evm.TU.LG04.2341
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 44874335 | 44876560 | - | evm.TU.LG04.2341 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.28 | 46,167.81 Da | 52.44 | 90.74 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 16 | 54 | 2.5E-5 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 99 | 266 | 7.46E-15 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 14 | 82 | 1.7E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 54 | 3.9E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 55 | 322 | 2.3E-12 | IPR032675 |
| SMART | SM00256 | fbox_2 | 19 | 59 | 0.009 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 13 | 60 | 9.470975 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02920.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_044466597.1 | F-box/LRR-repeat protein At3g26922-like [Mangifera indica] | 0 |
| Q1PE04 | F-box/LRR-repeat protein 25 OS=Arabidopsis thaliana OX=3702 GN=FBL25 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5C7GPX7 | F-box domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_027895 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30025950 |
| Nitrariaceae | Nitraria sibirica | 10 | evm.TU.LG01.220, evm.TU.LG01.266, evm.TU.LG03.1934 ... |