Basic Information
Locus ID:
evm.TU.LG04.2000
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 37081944 | 37085330 | - | evm.TU.LG04.2000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.41 | 47,102.75 Da | 67.00 | 69.61 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 216 | 259 | 1.25319E-24 | - |
| CDD | cd02123 | PA_C_RZF_like | 2 | 141 | 2.63786E-53 | IPR044744 |
| Pfam | PF02225 | PA domain | 61 | 127 | 9.2E-11 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 216 | 259 | 1.8E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 209 | 272 | 1.58E-19 | - |
| SUPERFAMILY | SSF52025 | PA domain | 61 | 127 | 7.32E-8 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 4 | 137 | 2.4E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 176 | 264 | 1.6E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 217 | 258 | 2.7E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 217 | 259 | 12.297489 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 399 | 436 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_021767251.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2-like [Chenopodium quinoa] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9ARE4 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology