Basic Information
Locus ID:
evm.TU.LG04.1926
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 36244525 | 36246116 | - | evm.TU.LG04.1926 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 41,239.87 Da | 64.48 | 61.83 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 242 | 284 | 2.63236E-24 | - |
| Pfam | PF14369 | zinc-ribbon | 18 | 52 | 1.7E-11 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 242 | 284 | 1.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 226 | 289 | 1.17E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 204 | 290 | 1.7E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 243 | 283 | 4.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 243 | 284 | 12.651561 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021838463.1 | probable E3 ubiquitin-protein ligase RHC1A isoform X2 [Spinacia oleracea] | 0 |
| Q94AK4 | E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QRX9 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_155210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology