Basic Information
Locus ID:
evm.TU.LG04.1842
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 34813376 | 34814545 | + | evm.TU.LG04.1842 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.98 | 42,040.00 Da | 59.16 | 67.09 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 183 | 226 | 2.87936E-18 | - |
| Pfam | PF13639 | Ring finger domain | 183 | 226 | 1.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 163 | 233 | 3.53E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 158 | 231 | 5.3E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 184 | 225 | 1.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 184 | 226 | 12.518784 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 313 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72220.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021743613.1 | RING-H2 finger protein ATL54-like [Chenopodium quinoa] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LUT7 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology