Basic Information
Locus ID:
evm.TU.LG04.1672
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 31724227 | 31727207 | + | evm.TU.LG04.1672 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 60,995.29 Da | 41.56 | 79.22 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 393 | 525 | 3.98967E-45 | IPR033734 |
| CDD | cd09612 | Jacalin | 219 | 347 | 3.73359E-38 | IPR033734 |
| CDD | cd09612 | Jacalin | 14 | 143 | 4.53423E-44 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 393 | 525 | 4.2E-35 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 14 | 145 | 1.0E-32 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 219 | 347 | 7.8E-28 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 4 | 145 | 2.75E-41 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 382 | 524 | 9.29E-44 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 208 | 347 | 3.01E-35 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 1 | 144 | 1.5E-52 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 200 | 347 | 2.5E-45 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 372 | 525 | 4.6E-50 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 14 | 145 | 1.7E-40 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 219 | 349 | 1.2E-32 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 393 | 526 | 3.2E-45 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 208 | 349 | 41.275799 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 382 | 526 | 50.167282 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 3 | 145 | 49.060535 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_021846285.1 | jacalin-related lectin 3-like isoform X1 [Spinacia oleracea] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9DXH2 | Jacalin-type lectin domain-containing protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology