Basic Information
Locus ID:
evm.TU.LG04.1574
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 33118476 | 33119834 | + | evm.TU.LG04.1574 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 48,334.60 Da | 66.07 | 56.06 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 404 | 441 | 7.68467E-11 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 401 | 445 | 8.3E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 403 | 448 | 1.6E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 377 | 452 | 4.2E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 404 | 441 | 7.7E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 404 | 442 | 10.822189 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 163 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07120.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_031285597.1 | E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8 [Pistacia vera] | 0 |
| TrEMBL | V4T971 | RING-type domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10020442mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology