Basic Information
Locus ID:
evm.TU.LG04.1547
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
transcriptional co-repressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 32483548 | 32489629 | + | evm.TU.LG04.1547 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 85,402.54 Da | 46.49 | 66.83 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 506 | 783 | 4.80412E-60 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 507 | 534 | 6.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 543 | 576 | 6.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 749 | 783 | 0.0088 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 35 | 1.3E-5 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 667 | 700 | 0.0051 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 499 | 783 | 4.89E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 499 | 634 | 1.7E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 635 | 783 | 8.2E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 744 | 783 | 6.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 623 | 659 | 50.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 495 | 534 | 1.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 580 | 620 | 0.01 | IPR001680 |
| SMART | SM00320 | WD40_4 | 537 | 576 | 1.5E-6 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0062 | IPR006594 |
| SMART | SM00320 | WD40_4 | 703 | 742 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 662 | 700 | 1.6E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 751 | 783 | 12.525585 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 544 | 576 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.137823 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 751 | 783 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 502 | 537 | 9.388329 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 502 | 543 | 12.01227 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 587 | 622 | 9.706414 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 544 | 576 | 10.495596 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 521 | 535 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 563 | 577 | 1.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 770 | 783 | 1.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 521 | 535 | 1.1E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 406 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 406 | - | - |
| Coils | Coil | Coil | 79 | 109 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_030933758.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Quercus lobata] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A7N2MMI7 | LisH domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology