Basic Information
Locus ID:
evm.TU.LG04.1452
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 27766938 | 27769577 | - | evm.TU.LG04.1452 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 97,372.35 Da | 40.14 | 88.90 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 371 | 397 | 0.028 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 268 | 295 | 0.0016 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 399 | 428 | 1.0E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 199 | 228 | 0.0059 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 298 | 327 | 2.1E-7 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 497 | 540 | 3.6E-7 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 600 | 643 | 3.5E-10 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 95 | 143 | 1.7E-14 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 173 | 198 | 3.3E-4 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 700 | 747 | 3.7E-8 | IPR002885 |
| SUPERFAMILY | SSF48452 | TPR-like | 685 | 860 | 1.8E-5 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 554 | 657 | 2.7E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 454 | 550 | 1.2E-21 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 701 | 878 | 3.1E-31 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 333 | 453 | 2.6E-20 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 252 | 330 | 1.7E-7 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 146 | 251 | 2.1E-20 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 15 | 145 | 6.6E-21 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 675 | 703 | 1.1E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 199 | 232 | 1.1E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 703 | 736 | 9.2E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 472 | 500 | 9.9E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 268 | 297 | 1.7E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 99 | 131 | 1.2E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 298 | 331 | 6.4E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 399 | 432 | 1.6E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 173 | 199 | 1.9E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 602 | 635 | 3.1E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 500 | 533 | 4.2E-7 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 96 | 130 | 12.638436 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 701 | 735 | 10.237912 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 296 | 330 | 11.005202 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 498 | 532 | 12.210946 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 166 | 196 | 8.780059 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 197 | 231 | 10.753093 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 670 | 700 | 9.152743 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 397 | 431 | 11.39981 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 600 | 634 | 12.594591 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 736 | 766 | 8.516988 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39620.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_048494894.1 | pentatricopeptide repeat-containing protein At2g39620 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| O80647 | Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E33 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803N092 | Pentatricopeptide repeat-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24434 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033616 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g037410 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19889, Sbi_jg44652 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17347 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00024039 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63698, Sgl68200 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000021560, gene:ENSEOMG00000050726 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2AG0009780 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30175040 |
| Apiaceae | Apium graveolens | 1 | Ag10G01116 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G000840 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.46.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G28911 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G39620.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016248m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g21880.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g025470.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0739 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g07690 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g02680 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05287 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1452, evm.TU.LG05.1977 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1706 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26022 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7668 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-4515, nbisL1-mrna-4516 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.357 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17549 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9474 |
| Salicaceae | Populus euphratica | 1 | populus_peu06399 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132613496, gene-LOC132615578 |
| Solanaceae | Solanum chilense | 1 | SOLCI007470700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015926 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.2306_chr01_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0915 |
| Zosteraceae | Zostera marina | 1 | Zosma06g27790.v3.1 |