Basic Information
Locus ID:
evm.TU.LG04.1372
Species & Taxonomic ID:
Nitraria sibirica & 357931
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 27433204 | 27443523 | - | evm.TU.LG04.1372 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.12 | 176,451.63 Da | 39.11 | 108.35 | 0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 957 | 1251 | 4.69681E-95 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1274 | 1494 | 1.07054E-125 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 638 | 838 | 1.82171E-102 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 325 | 612 | 4.66405E-105 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 656 | 790 | 2.2E-18 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 328 | 592 | 2.4E-31 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1293 | 1441 | 2.7E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 959 | 1200 | 8.2E-31 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 313 | 620 | 9.29E-41 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 955 | 1256 | 3.53E-52 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1265 | 1506 | 3.16E-67 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 633 | 859 | 2.41E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1260 | 1512 | 8.6E-81 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 636 | 868 | 3.3E-69 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 294 | 621 | 5.5E-57 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 918 | 1256 | 6.2E-61 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1302 | 1487 | 5.8E-15 | IPR003593 |
| SMART | SM00382 | AAA_5 | 665 | 846 | 2.4E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 959 | 1229 | 36.955612 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1276 | 1510 | 17.820593 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 638 | 861 | 22.442419 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 327 | 604 | 38.056522 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 763 | 777 | - | IPR017871 |
| Coils | Coil | Coil | 914 | 934 | - | - |
| Coils | Coil | Coil | 283 | 303 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_006479427.2 | ABC transporter C family member 5 [Citrus sinensis] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | V4U460 | ABC-type xenobiotic transporter OS=Citrus clementina OX=85681 GN=CICLE_v10018479mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology