Basic Information
Locus ID:
evm.TU.LG04.1309
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Tudor PWWP MBT superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 25105872 | 25107813 | + | evm.TU.LG04.1309 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 68,139.04 Da | 41.57 | 66.39 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 140 | 226 | 5.65412E-30 | - |
| Pfam | PF00855 | PWWP domain | 140 | 225 | 5.0E-16 | IPR000313 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 517 | 594 | 4.12E-6 | IPR035979 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 137 | 245 | 3.55E-26 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 129 | 232 | 2.6E-24 | - |
| SMART | SM00293 | PWWP_4 | 140 | 201 | 2.8E-12 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 142 | 203 | 15.072632 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 599 | 618 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 386 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 413 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 438 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09670.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_010667237.1 | PWWP domain-containing protein 5 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SF36 | PWWP domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PDP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8B6J6 | PWWP domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_007530 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology