Basic Information
Locus ID:
evm.TU.LG04.130
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 2876872 | 2899885 | + | evm.TU.LG04.130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 101,534.37 Da | 51.29 | 70.18 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 602 | 871 | 1.30156E-41 | - |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 619 | 676 | 2.8E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 748 | 786 | 0.037 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 701 | 735 | 7.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 836 | 871 | 0.0019 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 581 | 872 | 6.87E-58 | IPR036322 |
| Gene3D | G3DSA:4.10.1000.10 | - | 1 | 36 | 1.9E-6 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 527 | 874 | 1.6E-124 | IPR015943 |
| SMART | SM00320 | WD40_4 | 696 | 735 | 4.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 744 | 786 | 1.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 654 | 692 | 0.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 612 | 651 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 832 | 871 | 6.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 789 | 829 | 220.0 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 6 | 32 | 12.173532 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 703 | 735 | 13.582925 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 839 | 872 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 839 | 872 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 703 | 735 | 11.260138 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 619 | 651 | 9.124694 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 619 | 660 | 12.01227 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 858 | 872 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 346 | - | - |
| Coils | Coil | Coil | 129 | 156 | - | - |
| Coils | Coil | Coil | 202 | 226 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_010671158.1 | cell division cycle 20.2, cofactor of APC complex [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L226 | ANAPC4_WD40 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21025 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25786 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah037475 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g208480 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg41795, Sbi_jg48332 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27662 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018188, gene:ENSEOMG00000036687 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9BG0016150 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30018710 |
| Apiaceae | Apium graveolens | 1 | Ag11G03316 |
| Arecaceae | Cocos nucifera | 2 | COCNU_12G003650, scaffold019629G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103715485, gene-LOC120112702 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.235.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G30236 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G21810.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020800m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g19810.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g049610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2455 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G2540, Cgl02G2552 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno13g00670, gene.Cymno17g06030 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g03920 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.2040 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00009920 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G28328, Lb5G28334 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.2726, AH07.440, BH06.2524, BH07.564, CH06.2823 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0102410, gene-QOZ80_2BG0155680 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0565380.1, HORVU.MOREX.r3.7HG0732480.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_020675, gene-QYE76_035923 |
| Poaceae | Oryza coarctata | 4 | Oco03G002980, Oco04G002930, Oco11G015380, Oco12G015700 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g06584.2, LOC_Os06g46890.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G045900, gene-BS78_10G233700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0202535, Pt_Chr0401200 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr05G009870, Chr06G034660, Chr10G020550, Chr11G002080 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G285400, Tel7E01G761200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG018200, gene_TRIDC6BG024070 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G135300.1, TraesCS6B02G163300.2 ... |
| Poaceae | Zea mays | 3 | Zm00001eb207650_P006, Zm00001eb225260_P002 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-29916, nbis-gene-33695, nbis-gene-9725 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g12224, Zma_g14982, Zma_g31014, Zma_g33266 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.640, evm.TU.LG01.641, evm.TU.LG04.130 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g01820 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1488, evm.TU.Scaffold_9_RagTag.1351 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14855, nbisL1-mrna-8796 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11007, nbisL1-mrna-21327 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.828, evm.TU.utg000006l.854 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009716, Maker00013448 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10381, nbisL1-mrna-1230 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4739 |
| Salicaceae | Populus euphratica | 1 | populus_peu22670 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636631 |
| Solanaceae | Solanum chilense | 1 | SOLCI000832900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007567 |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.20444_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1350 |
| Zosteraceae | Zostera marina | 1 | Zosma05g20360.v3.1 |