Basic Information
Locus ID:
evm.TU.LG04.1243
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 18314675 | 18316651 | + | evm.TU.LG04.1243 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.72 | 13,687.51 Da | 56.05 | 95.81 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00305 | Lipoxygenase | 1 | 117 | 8.9E-54 | IPR013819 |
| SUPERFAMILY | SSF48484 | Lipoxigenase | 1 | 117 | 4.84E-48 | IPR036226 |
| Gene3D | G3DSA:1.20.245.10 | - | 1 | 117 | 1.5E-44 | - |
| ProSiteProfiles | PS51393 | Lipoxygenase iron-binding catalytic domain profile. | 1 | 117 | 55.612103 | IPR013819 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G22400.1 | PLAT/LH2 domain-containing lipoxygenase family protein. | 0 |
| RefSeq | XP_034923719.1 | probable linoleate 9S-lipoxygenase 5 isoform X3 [Populus alba] | 0 |
| Q43191 | Probable linoleate 9S-lipoxygenase 5 OS=Solanum tuberosum OX=4113 GN=LOX1.5 PE=2 SV=1 | 0 | |
| TrEMBL | Q8L7Y6 | Lipoxygenase (Fragment) OS=Betula pendula OX=3505 GN=LOX1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000011612 |
| Apiaceae | Apium graveolens | 3 | Ag9G02002, Ag9G02003, Ag9G02004 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.982.V1.1 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1243 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr15G011610 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1404 |