Basic Information
Locus ID:
evm.TU.LG04.1192
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
DA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 23320118 | 23327179 | - | evm.TU.LG04.1192 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 54,196.82 Da | 55.23 | 68.63 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 123 | 175 | 4.13962E-28 | - |
| Pfam | PF12315 | Protein DA1 | 273 | 470 | 8.3E-96 | IPR022087 |
| Pfam | PF00412 | LIM domain | 123 | 177 | 5.1E-8 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 116 | 148 | 8.08E-7 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 149 | 204 | 1.95E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 116 | 181 | 3.7E-15 | - |
| SMART | SM00726 | uim | 77 | 96 | 0.15 | IPR003903 |
| SMART | SM00132 | lim_4 | 122 | 174 | 2.5E-11 | IPR001781 |
| SMART | SM00726 | uim | 46 | 65 | 0.0028 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 77 | 96 | 9.055319 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 47 | 65 | 10.010044 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 121 | 181 | 11.979099 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 123 | 157 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 48 | - | - |
| Coils | Coil | Coil | 69 | 89 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19270.1 | DA1. | 0 |
| RefSeq | XP_021689070.1 | protein DA1-like [Hevea brasiliensis] | 0 |
| P0C7Q8 | Protein DA1 OS=Arabidopsis thaliana OX=3702 GN=DA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8ZA37 | LIM zinc-binding domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology