Basic Information
Locus ID:
evm.TU.LG04.1102
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Contains the following InterPro domains Glycoside hydrolase, family 18, catalytic domain (InterPro IPR001223), Chitinase II (InterPro IPR011583), Glycoside hydrolase, catalytic core (InterPro IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro IPR013781)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 21951714 | 21952992 | + | evm.TU.LG04.1102 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.39 | 25,757.58 Da | 33.29 | 74.38 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 55 | 191 | 2.6E-24 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 57 | 191 | 2.11E-15 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 95 | 165 | 2.68E-12 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 46 | 196 | 3.2E-12 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 98 | 164 | 1.9E-17 | IPR029070 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 1 | 206 | 16.316315 | IPR001223 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19770.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_021725043.1 | chitinase-3-like protein 1 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803MPV2 | GH18 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology