Basic Information
Locus ID:
evm.TU.LG04.1092
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Large proline-rich protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 21853472 | 21865007 | + | evm.TU.LG04.1092 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 80,202.95 Da | 64.03 | 71.94 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 47 | 105 | 4.1E-15 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 43 | 112 | 2.26E-17 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 41 | 118 | 2.0E-18 | - |
| SMART | SM00213 | ubq_7 | 30 | 104 | 5.1E-14 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 30 | 108 | 17.234438 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 504 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 650 | 684 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 650 | 689 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 554 | 574 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 712 | 737 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 712 | 759 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 504 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25270.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_010687773.2 | ubiquitin-like domain-containing protein CIP73 [Beta vulgaris subsp. vulgaris] | 0 |
| D5LXJ0 | Ubiquitin-like domain-containing protein CIP73 OS=Lotus japonicus OX=34305 GN=CIP73 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9AFX6 | Ubiquitin-like domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4628 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8925 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014199 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g192830 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25456, Sbi_jg9309 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19292 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011088 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41866, Sgl46668 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009121, gene:ENSEOMG00000032615 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0023200, CQ.Regalona.r1.8BG0019150 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30179830 |
| Apiaceae | Apium graveolens | 2 | Ag11G04408, Ag8G00354 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G010250 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715983 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.97.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G00561 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G25270.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003804m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g22260.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g077850.2N, BniB04g003860.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2485 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2623 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g08110 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g29320 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.105 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019330 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb0G38266, Lb0G38267, Lb6G32004, Lb6G32012 |
| Poaceae | Echinochloa crus-galli | 2 | AH03.318, CH03.467 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0625670, gene-QOZ80_8BG0655230 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0231510.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_032117 |
| Poaceae | Oryza coarctata | 2 | Oco15G005790, Oco16G005590 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g19830.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G027900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0201858 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G012400, Chr17G011730 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G144200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG009430, gene_TRIDC3BG013280 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G079200.2, TraesCS3B02G094400.5 ... |
| Poaceae | Zea mays | 1 | Zm00001eb067410_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-45895 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22783 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1092, evm.TU.LG05.1636 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g18170, gene.Posoc03g12030 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.109 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13900 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21296 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16545 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.71 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015182 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16703 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14504 |
| Salicaceae | Populus euphratica | 2 | populus_peu05666, populus_peu11030 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132606074, gene-LOC132625479, gene-LOC132625485 |
| Solanaceae | Solanum chilense | 1 | SOLCI003292800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023172 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9024 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1143 |
| Zosteraceae | Zostera marina | 2 | Zosma05g18810.v3.1, Zosma05g18820.v3.1 |