Basic Information
Locus ID:
evm.TU.LG03.709
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 7394659 | 7400082 | + | evm.TU.LG03.709 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 164,318.16 Da | 39.21 | 107.42 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1216 | 1436 | 1.3536E-122 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 287 | 574 | 2.07313E-89 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 599 | 804 | 7.11088E-95 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 903 | 1193 | 4.45858E-75 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 1235 | 1383 | 2.3E-30 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 626 | 756 | 1.0E-12 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 288 | 553 | 3.0E-24 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 911 | 1144 | 1.0E-25 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 904 | 1198 | 1.83E-48 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 282 | 582 | 2.09E-28 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 625 | 818 | 1.47E-46 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1209 | 1444 | 2.89E-68 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 579 | 848 | 1.0E-62 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 869 | 1199 | 1.2E-53 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 262 | 578 | 1.6E-43 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1201 | 1454 | 1.7E-81 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1244 | 1431 | 1.9E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 630 | 804 | 8.7E-11 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 289 | 566 | 31.232397 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 599 | 827 | 18.147388 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1218 | 1452 | 17.867279 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 905 | 1181 | 33.335346 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 729 | 743 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_044491056.1 | putative ABC transporter C family member 15 isoform X1 [Mangifera indica] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | V4TDI8 | ABC-type xenobiotic transporter OS=Citrus clementina OX=85681 GN=CICLE_v10030504mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology