Basic Information
Locus ID:
evm.TU.LG03.578
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 6242173 | 6244183 | - | evm.TU.LG03.578 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.88 | 46,723.29 Da | 34.96 | 75.49 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 254 | 285 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 129 | 164 | 1.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 291 | 325 | 0.027 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 127 | 415 | 1.46E-48 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 97 | 119 | 6.12E-5 | IPR036855 |
| Gene3D | G3DSA:3.30.1370.210 | - | 21 | 119 | 2.7E-9 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 189 | 420 | 5.6E-35 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 120 | 186 | 6.1E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 125 | 164 | 6.0E-5 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 96 | 120 | 0.5 | IPR000571 |
| SMART | SM00320 | WD40_4 | 248 | 285 | 1.8E-5 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 23 | 48 | 0.0032 | IPR000571 |
| SMART | SM00320 | WD40_4 | 167 | 202 | 430.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 332 | 373 | 3.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 289 | 326 | 0.0086 | IPR001680 |
| SMART | SM00320 | WD40_4 | 204 | 241 | 5.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 379 | 413 | 13.0 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 94 | 121 | 10.896615 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 255 | 285 | 10.337415 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 132 | 164 | 10.68014 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 132 | 173 | 14.017362 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 255 | 285 | 12.413288 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 23 | 49 | 11.328514 | IPR000571 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 313 | 327 | 2.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 272 | 286 | 2.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 151 | 165 | 2.7E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 90 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_048491280.1 | zinc finger CCCH domain-containing protein 48 [Beta vulgaris subsp. vulgaris] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C9EAM5 | WD_REPEATS_REGION domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology