Basic Information
Locus ID:
evm.TU.LG03.549
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 5710041 | 5718202 | + | evm.TU.LG03.549 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.21 | 116,511.02 Da | 44.17 | 80.28 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 325 | 648 | 1.17305E-86 | - |
| CDD | cd18793 | SF2_C_SNF | 844 | 1003 | 4.19409E-56 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 899 | 994 | 1.2E-15 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 346 | 725 | 8.8E-69 | IPR000330 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 762 | 806 | 2.0E-7 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 309 | 648 | 4.99E-46 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 759 | 801 | 1.16E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 656 | 1051 | 8.86E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 416 | 504 | 1.4E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 752 | 815 | 2.5E-12 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 540 | 659 | 3.8E-30 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 663 | 1052 | 2.2E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 294 | 390 | 4.8E-11 | IPR038718 |
| SMART | SM00184 | ring_2 | 764 | 804 | 0.0012 | IPR001841 |
| SMART | SM00487 | ultradead3 | 321 | 627 | 1.3E-30 | IPR014001 |
| SMART | SM00490 | helicmild6 | 911 | 994 | 2.4E-16 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 764 | 800 | 11.353297 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 340 | 610 | 12.231831 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 884 | 1047 | 14.253438 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 779 | 788 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 413 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 520 | 541 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 375 | 413 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 118 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_006437657.1 | helicase-like transcription factor CHR28 isoform X2 [Citrus clementina] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | V4TC84 | Helicase-like transcription factor CHR28 OS=Citrus clementina OX=85681 GN=CICLE_v10030591mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology